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Metadata for NC_039601.1


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Accession Title
NC_039601.1
Type Last Updated Base Pair Length No. of RNAs Annotated DNA Stats
Chloroplast April 3, 2023 155769
rRNA: 8
tRNA: 36
GC Content: 37.68
Ambiguity Content: 0.0
Total Genes Gene List
115
GeneStartEnd
accD 59193 60666
atpA 10664 12188
atpB 54644 56141
atpE 54246 54648
atpF 12242 13493
atpH 13894 14140
atpI 15183 15927
ccsA 116159 117107
cemA 63253 63943
clpP 72242 74320
infA 82097 82268
matK 2135 3671
ndhA 121530 123786
ndhB 96681 98893
ndhC 51601 51964
ndhD 117358 118855
ndhE 119469 119775
ndhF 111784 114007
ndhG 119998 120529
ndhH 123787 124969
ndhI 120942 121446
ndhJ 50284 50761
ndhK 50867 51611
petA 64162 65125
petB 77284 78682
petD 78881 80099
petG 68277 68391
petL 67985 68081
petN 29534 29624
psaA 40329 42582
psaB 38099 40304
psaC 118972 119218
psaI 61414 61525
psaJ 69301 69436
psbA 560 1622
psbB 74772 76299
psbC 34589 36011
psbD 33580 34642
psbE 66733 66985
psbF 66604 66724
psbH 76933 77155
psbI 8566 8677
psbJ 66210 66333
psbK 8013 8199
psbL 66457 66574
psbM 30737 30842
psbN 76690 76822
psbT 76505 76610
psbZ 36701 36890
rbcL 56971 58405
rpl2 86477 87963
rpoA 80275 81289
rpoB 24253 27466
rps2 16162 16873
rps3 84971 85628
rps4 46712 47318
rps7 99178 99646
rps8 82321 82726
rrn5 109388 109509
sprA 115048 115311
trnG 9524 10288
trnH 32 107
trnK 1836 4414
trnQ 7596 7668
trnR 10474 10546
trnS 8797 8885
ycf1 110846 111791
ycf2 88590 95457
ycf3 43430 45427
ycf4 61969 62524
rpl14 82893 83262
rpl16 83393 84826
rpl20 70803 71190
rpl22 85612 86080
rpl23 87981 88263
rpl32 114815 114983
rpl33 69873 70074
rpl36 81872 81986
rpoC1 21440 24227
rpoC2 17112 21288
rps11 81354 81771
rps12 72020 72134
rps12 99699 100493
rps14 37678 37981
rps15 125085 125349
rps16 5042 6155
rps18 70283 70589
rps19 86132 86411
rrn16 102422 103922
rrn23 106118 108928
ycf15 95547 95811
ndhB_2 143238 145450
rpl2_2 154168 155654
rps7_2 142485 142953
rrn4.5 109029 109132
rrn5_2 132622 132743
ycf1_2 125750 131285
ycf2_2 146674 153541
rpl23_2 153868 154150
rps12_2 72020 72134
rps12_2 141638 142432
rps19_2 155720 155769
rrn16_2 138209 139709
rrn23_2 133203 136013
ycf15_2 146320 146584
rrn4.5_2 132999 133102
trnA-UGC 105081 105965
trnC-GCA 28791 28863
trnD-GUC 31353 31427
trnE-UUC 31678 31751
trnF-GAA 49538 49611
trnG-UCC 37171 37242
trnI-CAU 88428 88502
trnI-GAU 104222 105017
trnL-CAA 145988 146069
trnL-UAA 48475 49056
trnL-UAG 115976 116061
trnM-CAU 53952 54025
trnN-GUU 110446 110518
trnP-UGG 68760 68834
trnR-ACG 109786 109860
trnS-GGA 46278 46365
trnS-UGA 36251 36343
trnT-GGU 32298 32370
trnT-UGU 47690 47763
trnV-GAC 102123 102195
trnV-UAC 53114 53770
trnW-CCA 68522 68596
trnY-GUA 31535 31619
trnfM-CAU 37455 37529
trnA-UGC_2 136166 137050
trnI-CAU_2 153629 153703
trnI-GAU_2 137114 137909
trnN-GUU_2 131613 131685
trnR-ACG_2 132271 132345
trnV-GAC_2 139936 140008

Inverted Repeats Reported for NC_039601.1


IRa Start Position 86363
IRa End Position 111791
IRa Length (bp) 25429
IRb Start Position 130341
IRb End Position 155769
IRb Length (bp) 25429

Inverted Repeats Inferred for NC_039601.1


IRa Start Position Inferred by BLAST 86363
IRa End Position Inferred by BLAST 111791
IRa Length Inferred by BLAST (bp) 25429
IRb Start Position Inferred by BLAST 130341
IRb End Position Inferred by BLAST 155769
IRb Length (bp) Inferred by BLAST 25429

This website is developed by David Bohorquez, Lead Database Developer, under the direction of Dr. Michael Gruenstaeudl, Principal Investigator.
The development is supported by the National Library of Medicine of the National Institutes of Health under award number R01LM014506.